Colourful Simplicial Depth

Inspired by Barany's colourful Caratheodory theorem, we introduce a colourful generalization of Liu's simplicial depth. We prove a parity property and conjecture that the minimum colourful simplicial depth of any core point in any d-dimensional configuration is d^2+1 and that the maximum is d^(d+1)+1. We exhibit configurations attaining each of these depths and apply our results to the problem of bounding monochrome (non-colourful) simplicial depth.Comment: 18 pages, 5 figues. Minor polishin

Time Dependent Saddle Node Bifurcation: Breaking Time and the Point of No Return in a Non-Autonomous Model of Critical Transitions

There is a growing awareness that catastrophic phenomena in biology and medicine can be mathematically represented in terms of saddle-node bifurcations. In particular, the term `tipping', or critical transition has in recent years entered the discourse of the general public in relation to ecology, medicine, and public health. The saddle-node bifurcation and its associated theory of catastrophe as put forth by Thom and Zeeman has seen applications in a wide range of fields including molecular biophysics, mesoscopic physics, and climate science. In this paper, we investigate a simple model of a non-autonomous system with a time-dependent parameter $p(\tau)$ and its corresponding `dynamic' (time-dependent) saddle-node bifurcation by the modern theory of non-autonomous dynamical systems. We show that the actual point of no return for a system undergoing tipping can be significantly delayed in comparison to the {\em breaking time} $\hat{\tau}$ at which the corresponding autonomous system with a time-independent parameter $p_{a}= p(\hat{\tau})$ undergoes a bifurcation. A dimensionless parameter $\alpha=\lambda p_0^3V^{-2}$ is introduced, in which $\lambda$ is the curvature of the autonomous saddle-node bifurcation according to parameter $p(\tau)$, which has an initial value of $p_{0}$ and a constant rate of change $V$. We find that the breaking time $\hat{\tau}$ is always less than the actual point of no return $\tau^*$ after which the critical transition is irreversible; specifically, the relation $\tau^*-\hat{\tau}\simeq 2.338(\lambda V)^{-\frac{1}{3}}$ is analytically obtained. For a system with a small $\lambda V$, there exists a significant window of opportunity $(\hat{\tau},\tau^*)$ during which rapid reversal of the environment can save the system from catastrophe

Relative Stability of Network States in Boolean Network Models of Gene Regulation in Development

Progress in cell type reprogramming has revived the interest in Waddington's concept of the epigenetic landscape. Recently researchers developed the quasi-potential theory to represent the Waddington's landscape. The Quasi-potential U(x), derived from interactions in the gene regulatory network (GRN) of a cell, quantifies the relative stability of network states, which determine the effort required for state transitions in a multi-stable dynamical system. However, quasi-potential landscapes, originally developed for continuous systems, are not suitable for discrete-valued networks which are important tools to study complex systems. In this paper, we provide a framework to quantify the landscape for discrete Boolean networks (BNs). We apply our framework to study pancreas cell differentiation where an ensemble of BN models is considered based on the structure of a minimal GRN for pancreas development. We impose biologically motivated structural constraints (corresponding to specific type of Boolean functions) and dynamical constraints (corresponding to stable attractor states) to limit the space of BN models for pancreas development. In addition, we enforce a novel functional constraint corresponding to the relative ordering of attractor states in BN models to restrict the space of BN models to the biological relevant class. We find that BNs with canalyzing/sign-compatible Boolean functions best capture the dynamics of pancreas cell differentiation. This framework can also determine the genes' influence on cell state transitions, and thus can facilitate the rational design of cell reprogramming protocols.Comment: 24 pages, 6 figures, 1 tabl

A taxonomy for Decentralized Finance

Decentralized Finance (‘DeFi’) has gained tremendous momentum over the past three years by using novel approaches to disintermediating financial institutions in the provision of financial services. However, empirical research in this field is still rare and a more comprehensive understanding of the domain is a missing component in academic research. This paper develops a taxonomy based on a comprehensive literature analysis to structure this emerging field systematically. The application of the taxonomy to 278 DeFi start-ups reveals that most of the DeFi start-ups focus on Ethereum (36.3%) and have a focus on analytics and automation (52%), while only a few incorporate decentralized governance approaches (3.3%), provide decentralized exchanges (14%) or integrate off-chain data